Ecotoxicogenomic Screening

Ecotoxicogenomic Screening for Ecotoxicological Risk Prediction

Figure 1: Ecotoxicogenomic data acquisition in model organisms using transcriptomics and proteomics approaches. Created by biorender.com

The active ingredients of pesticides, biocides, pharmaceuticals or cosmetics enter the environment either deliberately or through their use on humans or materials, where they can have a harmful effect on non-target organisms. Testing the environmental impact of an ever-increasing number of newly developed active ingredients represents an ever-increasing cost factor for the active ingredient-producing industry. In addition, the OECD tests required by law are time-consuming and resource-intensive and thus not compatible with the screening of substance precursors.

The application of state-of-the-art OMICs methods enables the sensitive and simultaneous genome-wide identification of substance-induced molecular changes in ecologically relevant organisms at the DNA (epigenome), RNA (transcriptome) and protein (proteome) levels. Knowledge of the molecular changes caused by a substance and their direct link to phenotypes and population effects opens up the possibility of early identification of ecotoxic substances and facilitates the classification of substances in terms of their environmental impact. Furthermore, such systems biology investigations can be carried out with minimal amounts of bioresources, making them a promising approach for the early detection of the environmental impact of substances as part of a screening process. At the same time, they enable a significant reduction in the number of animal experiments.

The OMICs-based identification of such pathways, which are disrupted by a substance, contributes significantly to the establishment of Adverse Outcome Pathways (AOPs). The AOP concept is used to directly link initial molecular events with the resulting adverse effects for the organism and the population and is also receiving increasing attention in regulatory substance assessment.

The Ecotoxicogenomics department combines ecotoxicological guideline testing with OMICs methods (RNA-Seq, quantitative LC-MS/MS) to detect early molecular changes that precede adverse organismic and population effects. Our molecular fingerprint database is used in screening methods to predict the environmental risks of substance precursors. The availability of such environmental side effect screening during industrial drug development avoids the costly further development of precursors with a high ecotoxic potential and enables the sustainable development of environmentally safe active ingredients.

 

We offer our customers

  • Molecular screening to detect and identify substance-induced mechanisms of action in a range of ecotoxicological model organisms.
  • The identification of threshold concentrations on the basis of gene expression data (transcriptomic point-of-departure, tPOD).
  • The investigation of aqueous media for harmful effects, for example in the zebrafish embryo model.

 

Figure 2: Adverse Outcome Pathway (AOP) concept and prediction approach using gene expression fingerprints of ecotoxic modes-of-action. Created with biorender.com

Selected Publications

  • Frelih, M., Ayobahan, S. U., Marghany, F., Essfeld, F., Eilebrecht, S.
    Toxicogenomic signatures of estrogen-related modes of action in the zebrafish embryo.

    (2025) Environmental Toxicology and Chemistry. doi.org/10.1093/etojnl/vgae059
  • Essfeld, F., Ayobahan, S.U., Strompen, J., Alvincz, J., Schmidt-Posthaus, H., Woelz, J., Mueller, T., Ringbeck, B., Teigeler, M., Eilebrecht, E., Eilebrecht, S.
    Transcriptomic Point of Departure (tPOD) of androstenedione in zebrafish embryos as a potential surrogate for chronic endpoints.
    (2024) Science of the Total Environment, 953, 176026. doi.org/10.1016/j.scitotenv.2024.176026
  • Essfeld, F., Luckner, B., Bruder, A., Marghany, F., Ayobahan, S. U., Alvincz, J., Eilebrecht, S.
    Gene biomarkers for the assessment of thyroid-disrupting activity in zebrafish embryos.

    (2024) Chemosphere, 365, 143287. doi.org/10.1016/j.chemosphere.2024.143287
  • Hanfland, J., Lousberg, J., Ringbeck, B., Schäfers, C., Schlich, K., Eilebrecht, S.
    Short-term test for the toxicogenomic assessment of ecotoxic modes of action in Myriophyllum spicatum.
    (2024) Science of the Total Environment, 924, 171722. https://doi.org/10.1016/j.scitotenv.2024.171722
  • Ayobahan, S.U., Alvincz, J., Reinwald, H., Strompen, J., Salinas, G., Schäfers, C., Eilebrecht, E., Eilebrecht, S.
    Comprehensive identification of gene expression fingerprints and biomarkers of sexual endocrine disruption in zebrafish embryo
    Ecotoxicology and Environmental Safety, 2023, doi.org/10.1016/j.ecoenv.2023.114514
  • Essfeld, F., Reinwald, H., Salinas, G., Schäfers, C., Eilebrecht, E., Eilebrecht, S.
    Transcriptomic profiling of clobetasol propionate-induced immunosuppression in challenged zebrafish embryos

    (2022) Ecotoxicology and Environmental Safety. doi.org/10.1016/j.ecoenv.2022.113346
  • Loll, A., Reinwald, H., Ayobahan, S.U., Göckener, B., Salinas, G., Schäfers, C., Schlich, K., Hamscher, G., Eilebrecht, S.
    Short-Term Test for Toxicogenomic Analysis of Ecotoxic Modes of Action in Lemna minor

    (2022) Environmental Science & Technology. doi.org/10.1021/acs.est.2c01777
  • Reinwald, H.; Alvincz, J.; Salinas, G.; Schäfers, C.; Hollert, H.; Eilebrecht, S.:
    Toxicogenomic profiling after sublethal exposure to nerve- and muscle-targeting insecticides reveals cardiac and neuronal developmental effects in zebrafish embryos.

    Chemosphere
    , 132746 (November 2021), doi.org/10.1016/j.chemosphere.2021.132746
  • Pfaff, J.; Reinwald, H.; Ayobahan, S.; Alvincz, J.; Göckener, B.; Shomroni, O.; Salinas, G.; Düring, R.-A.; Schäfers, C.; Eilebrecht, S.:
    Toxicogenomic differentiation of functional responses to fipronil and imidacloprid in Daphnia magna,
    Aquatic Toxicology, 105927, Vol. 238 (September 2021)
    doi.org/10.1016/j.aquatox.2021.105927
  • Reinwald, H., König, A., Ayobahan, S., Alvincz, J., Göckener, B., Böhle, G., Shomroni, O., Hollert, H., Salinas, G., Schäfers, C., Eilebrecht, E., Eilebrecht, S.:
    Toxicogenomic fin(ger)prints for thyroid disruption AOP refinement and biomarker identification in zebrafish embryos.
    Science of the Total Environment., Article number: 143914 (December 2020 online first)
    DOI: 10.1016/j.scititenv.2020.143914
  • Ayobahan, S.; Eilebrecht, S.; Baumann, L.; Teigeler, M.; Hollert, H.; Kalkhof, S.; Eilebrecht, E.; Schäfers, C.:
    Detection of biomarkers to differentiate endocrine disruption from hepatotoxicity in zebrafish (Danio rerio) using proteomics.
    Chemosphere, Article number: 124970 (2019 online first). Volume 240, February 2020
    DOI: 10.1016/j.chemosphere.2019.124970